diff --git a/tests/fixtures/config/conflict-config/git/common-config/.zuul.d/jobs.yaml b/tests/fixtures/config/conflict-config/git/common-config/.zuul.d/jobs.yaml
new file mode 100644
index 0000000..20056ee
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/common-config/.zuul.d/jobs.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: trusted-.zuul.d-jobs
diff --git a/tests/fixtures/config/conflict-config/git/common-config/.zuul.yaml b/tests/fixtures/config/conflict-config/git/common-config/.zuul.yaml
new file mode 100644
index 0000000..da2bc1e
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/common-config/.zuul.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: trusted-.zuul.yaml-job
diff --git a/tests/fixtures/config/conflict-config/git/common-config/zuul.d/jobs.yaml b/tests/fixtures/config/conflict-config/git/common-config/zuul.d/jobs.yaml
new file mode 100644
index 0000000..5a92f43
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/common-config/zuul.d/jobs.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: trusted-zuul.d-jobs
diff --git a/tests/fixtures/config/conflict-config/git/common-config/zuul.yaml b/tests/fixtures/config/conflict-config/git/common-config/zuul.yaml
new file mode 100644
index 0000000..792fc8f
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/common-config/zuul.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: trusted-zuul.yaml-job
diff --git a/tests/fixtures/config/conflict-config/git/org_project/.zuul.yaml b/tests/fixtures/config/conflict-config/git/org_project/.zuul.yaml
new file mode 100644
index 0000000..dc1ff45
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/org_project/.zuul.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: untrusted-.zuul.yaml-job
diff --git a/tests/fixtures/config/conflict-config/git/org_project/zuul.yaml b/tests/fixtures/config/conflict-config/git/org_project/zuul.yaml
new file mode 100644
index 0000000..cc63564
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/git/org_project/zuul.yaml
@@ -0,0 +1,2 @@
+- job:
+    name: untrusted-zuul.yaml-job
diff --git a/tests/fixtures/config/conflict-config/main.yaml b/tests/fixtures/config/conflict-config/main.yaml
new file mode 100644
index 0000000..208e274
--- /dev/null
+++ b/tests/fixtures/config/conflict-config/main.yaml
@@ -0,0 +1,8 @@
+- tenant:
+    name: tenant-one
+    source:
+      gerrit:
+        config-projects:
+          - common-config
+        untrusted-projects:
+          - org/project
diff --git a/tests/unit/test_configloader.py b/tests/unit/test_configloader.py
index 573ccbf..d08c6a1 100644
--- a/tests/unit/test_configloader.py
+++ b/tests/unit/test_configloader.py
@@ -12,6 +12,8 @@
 # License for the specific language governing permissions and limitations
 # under the License.
 
+import fixtures
+import logging
 import textwrap
 
 from tests.base import ZuulTestCase
@@ -245,3 +247,39 @@
         # project1-project2-integration test removed, only want project-test1
         self.assertHistory([
             dict(name='project-test1', result='SUCCESS', changes='1,1')])
+
+    def test_config_path_conflict(self):
+        def add_file(project, path):
+            new_file = textwrap.dedent(
+                """
+                - job:
+                    name: test-job
+                """
+            )
+            file_dict = {path: new_file}
+            A = self.fake_gerrit.addFakeChange(project, 'master', 'A',
+                                               files=file_dict)
+            self.fake_gerrit.addEvent(A.getPatchsetCreatedEvent(1))
+            self.waitUntilSettled()
+
+        log_fixture = self.useFixture(
+            fixtures.FakeLogger(level=logging.WARNING))
+
+        log_fixture._output.truncate(0)
+        add_file("common-config", "zuul.yaml")
+        self.assertIn("Multiple configuration", log_fixture.output)
+
+        log_fixture._output.truncate(0)
+        add_file("org/project1", ".zuul.yaml")
+        self.assertIn("Multiple configuration", log_fixture.output)
+
+
+class TestConfigConflict(ZuulTestCase):
+    tenant_config_file = 'config/conflict-config/main.yaml'
+
+    def test_conflict_config(self):
+        tenant = self.sched.abide.tenants.get('tenant-one')
+        jobs = sorted(tenant.layout.jobs.keys())
+        self.assertEquals(
+            ['noop', 'trusted-zuul.yaml-job', 'untrusted-zuul.yaml-job'],
+            jobs)
diff --git a/zuul/configloader.py b/zuul/configloader.py
index f8e2d15..6dc3274 100644
--- a/zuul/configloader.py
+++ b/zuul/configloader.py
@@ -1213,7 +1213,7 @@
                                    (job, job.files))
             loaded = False
             files = sorted(job.files.keys())
-            for conf_root in ['zuul.yaml', '.zuul.yaml', 'zuul.d', '.zuul.d']:
+            for conf_root in ['zuul.yaml', 'zuul.d', '.zuul.yaml', '.zuul.d']:
                 for fn in files:
                     fn_root = fn.split('/')[0]
                     if fn_root != conf_root or not job.files.get(fn):
@@ -1416,8 +1416,7 @@
                     fns1.append(fn)
                 if fn.startswith(".zuul.d/"):
                     fns2.append(fn)
-
-            fns = ['zuul.yaml', '.zuul.yaml'] + sorted(fns1) + sorted(fns2)
+            fns = ["zuul.yaml"] + sorted(fns1) + [".zuul.yaml"] + sorted(fns2)
             incdata = None
             loaded = None
             for fn in fns: